reinitialize import displacementmap fetch 1HP1, async=0 fetch 1HPU, async=0 hide everything ### Select asymmetric units from pdb file create O5NT, /1HP1//A create C5NT, /1HPU//C delete 1HP1 delete 1HPU show cartoon, all super O5NT and resi 26-355, C5NT and resi 26-355 ### Color set_color goldenrod1, [1.000, 0.757, 0.145] color goldenrod1, resi 26-355 set_color darkolivegreen1, [0.792, 1.000, 0.439] color darkolivegreen1, O5NT and resi 356-362 set_color darkolivegreen4, [0.431, 0.545, 0.239] color darkolivegreen4, C5NT and resi 356-362 set_color chocolate3, [0.804, 0.400, 0.114] color chocolate3, O5NT and resi 363-550 set_color purple4, [0.333, 0.102, 0.545] color purple4, C5NT and resi 363-550 # Select active site create active_site, resi 117+120+252+116+217+84+41+43+254 show sticks, active_site disable active_site # Make Cys-Cys bonds create SS, (cys/ca+cb+sg) and byres (cys/sg and bound_to cys/sg) show sticks, SS color yellow, SS # Mark water molecules create waters, resn HOH show nb_spheres, waters color blue, waters disable waters ### Make sharper, and transparent set fog=0 set cartoon_transparency, 0.7 ### Load the function dispmap #dispmap O5NT, C5NT, 40.0, 15.0, resi1=206, resi2=1-512.515-550 ## Look for serine #dispmap mindist=40.0, mindelta=15.0, resi1=206, resi2=330.347.350.405.412.419.457.467.533.534.539.548.336.367.383.397.439.448.490.495.501.518 #dispmap resi1=308, resi2=513 zoom O5NT