----------------------------------- INSTRUCTIONS TO RUN LD CALCULATIONS ----------------------------------- In order to run LD calculations, either using the API or the webcode, you will need: 1 - Install the IPC::Run module. You can get it from CPAN at: http://search.cpan.org/~rsod/IPC-Run-0.79/lib/IPC/Run.pm 2 - Compile the C code present in this directory, called calc_genotypes.c. You need to copy the binary file to one of the directories in your path in order for the API code to find it or add this directory (ensembl-variation/C_code in your path doing something like set path = ($path (your_path_to_ensembl_code)/ensembl-variation/C_code). You can compile the code doing: make calc_genotypes if the gcc compiler is installed in your system. Otherwise, you will need to find out which C compiler you have installed and modify the CC variable in the Makefile pointing to your compiler (icc,...)